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  • soap2 warning: length y <0 skip anyway

    Hi all,

    I have encountered a problem with soap2, when I would like to map my 17-30nt reads to genome (both fasta).
    I used default parameters and soap2 output was
    "length y <0 skip anyway"
    with only some 28-30nt reads mapped successfully.

    Is it possible to adjust the paramenters for mapping all the reads?

    Thank you!

    Franklin

  • #2
    Hi,
    I have the same problem you posted. Did you find any solution?
    Thanks for your time.

    Comment


    • #3
      Originally posted by giampe View Post
      Hi,
      I have the same problem you posted. Did you find any solution?
      Thanks for your time.
      Hi giampe,
      I couldn't find any solution, I just use Bowtie at last.
      Last edited by cwn5810; 03-17-2013, 10:52 PM.

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