Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
orthomcl error zxl124 Bioinformatics 7 11-10-2015 09:29 PM
Orthomcl for more then 2 species figo1019 Bioinformatics 0 01-08-2013 02:51 AM
If orthomcl is right anyone1985 Bioinformatics 0 03-22-2012 10:37 PM
Orthomcl warning message joscarhuguet Bioinformatics 0 04-20-2011 09:13 AM
Orthomcl Installation Canadian_philosophy Bioinformatics 0 07-29-2010 08:36 AM

Thread Tools
Old 08-21-2013, 02:54 PM   #1
Junior Member
Location: Seattle

Join Date: Jan 2013
Posts: 6
Default Orthomcl problems

I am trying to run Orthomcl, but when I try the first step to load the blast results into mysql (orthomclLoadBlast), I get the following error:

DBD::mysql::st execute failed: Table 'orthomcl.similarsequences' doesn't exist.

I am not sure what to do.

jflowers002 is offline   Reply With Quote
Old 08-21-2013, 04:08 PM   #2
Senior Member
Location: East Coast USA

Join Date: Feb 2008
Posts: 7,091

Did you follow the directions in the user guide to install/configure program/database etc?

The error above seems to indicate that you either did not create that table or called it something else.
GenoMax is offline   Reply With Quote
Old 08-26-2013, 07:14 AM   #3
Junior Member
Location: Seattle

Join Date: Jan 2013
Posts: 6
Default Solved

Thanks for the reply. I forgot to re-run the InstallSchema script after having to uninstall and then re-install Mysql to deal with issues with that installation.

Thanks again!
jflowers002 is offline   Reply With Quote
Old 07-22-2014, 07:54 AM   #4
Junior Member
Location: Medellín (Col)

Join Date: Jul 2014
Posts: 1

Somebody can said me how to process the output file of OrthoMCL to draw the venn diagrams ?

Thanks !!
impessa is offline   Reply With Quote

orthomcl, orthomclloadblast

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 10:45 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO