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Microbiome Analysis Core hmac Service Providers 1 12-18-2014 08:41 PM

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Old 06-04-2019, 05:26 PM   #1
menegidio
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Location: São Paulo

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Default [Microbiome] Core Compare

I have a microbiome dataset and I am trying to compare different groups of mice (symptomatic animals, asymptomatic animals and a control group).


I already performed some analyses with this dataset, but I am observing a great degree of individual variability among the animals. Thus, I was wondering if I could get better results by comparing only core microbiomes.


However, I am not quite sure about what whould be the best strategy to conduct such analyses. Should I use a core microbiome for all animals, or calculate individual cores for each subgroup, merge them and, then , run my comparisons?
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16s illumina analysis, microbiome, microbiome analysis, qiime

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