SEQanswers

Go Back   SEQanswers > General



Similar Threads
Thread Thread Starter Forum Replies Last Post
Add 'missing' lines of data by using python code visse226 General 3 12-22-2016 07:04 AM
Figuring out if populations from two regions share the same Neanderthal haplotypes... dnv89 General 0 08-04-2016 01:34 PM
Error while python code terse bio_informatics General 2 10-22-2014 11:18 AM
errors while using python dexseq_prepare_annotation.py greener Bioinformatics 14 02-26-2013 12:01 AM
Help figuring out variant call format (vcf) bmtb Bioinformatics 1 12-11-2012 12:09 AM

Reply
 
Thread Tools
Old 09-10-2019, 08:41 AM   #1
screadore
Junior Member
 
Location: Tampa, FL

Join Date: Sep 2019
Posts: 1
Default Need help figuring out these errors in Python code... Please help

Hey guys I'm having issues finding solutions to these problems for my RNAseq python project can anyone help?
Code:
Traceback (most recent call last):
  File "<input>", line 1, in <module>
  File "/Applications/PyCharm.app/Contents/helpers/pydev/_pydev_bundle/pydev_umd.py", line 197, in runfile
    pydev_imports.execfile(filename, global_vars, local_vars)  # execute the script
  File "/Applications/PyCharm.app/Contents/helpers/pydev/_pydev_imps/_pydev_execfile.py", line 18, in execfile
    exec(compile(contents+"\n", file, 'exec'), glob, loc)
  File "/Users/screadore/Desktop/RNAcode/CodePackageE.py", line 118, in <module>
    df = get_data()

Last edited by GenoMax; 09-10-2019 at 08:56 AM. Reason: Added [code] tags
screadore is offline   Reply With Quote
Old 09-10-2019, 08:57 AM   #2
GenoMax
Senior Member
 
Location: East Coast USA

Join Date: Feb 2008
Posts: 6,978
Default

You need to provide more information about what software you are running, how you are running it. Is it custom code you wrote or a package that is available on web?
GenoMax is offline   Reply With Quote
Old 09-11-2019, 04:52 AM   #3
sklages
Senior Member
 
Location: Berlin, DE

Join Date: May 2008
Posts: 628
Default

Quote:
Originally Posted by screadore View Post
Hey guys I'm having issues finding solutions to these problems for my RNAseq python project can anyone help?
Code:
Traceback (most recent call last):
  File "<input>", line 1, in <module>
  File "/Applications/PyCharm.app/Contents/helpers/pydev/_pydev_bundle/pydev_umd.py", line 197, in runfile
    pydev_imports.execfile(filename, global_vars, local_vars)  # execute the script
  File "/Applications/PyCharm.app/Contents/helpers/pydev/_pydev_imps/_pydev_execfile.py", line 18, in execfile
    exec(compile(contents+"\n", file, 'exec'), glob, loc)
  File "/Users/screadore/Desktop/RNAcode/CodePackageE.py", line 118, in <module>
    df = get_data()

cross-posted in https://www.reddit.com/r/Python/comm..._these_issues/
sklages is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 05:41 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO