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Old 10-23-2011, 09:46 PM   #1
ejcho82
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Location: Canberra

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Default RSEM: has anyone tried this?

any verdicts on this one? Is it doing better than Cufflinks?
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Old 10-24-2011, 01:30 AM   #2
kopi-o
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I haven't benchmarked it thoroughly yet so I don't have an answer to your second question, but one nice feature with it is that it can generate a simulated RNA-seq dataset to compare different quantifiers on (although one might not want to include RSEM itself in such a comparison).
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Old 09-14-2019, 11:08 AM   #3
RobertWood90
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Yes I tried this. However, I had problems with some places that took me too long to solve. But in the end I managed to get it done. Thank you.
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