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Old 01-20-2011, 05:34 PM   #1
Livi81
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Location: BC, Canada

Join Date: Apr 2010
Posts: 21
Default miRNA targets expression profiles

Hi all,
I'm new to miRNA research and I'm curious about the tools already available. I have RNA-seq data from two samples, we've identified differentially expressed transcripts. I also have tag-seq data from the same two samples and we've identified differentially expressed miRNAs.
Are there any bioinformatic tool that are able to cross reference the two lists of differentially expressed genes and miRNAs to give as output miRNAs and targets genes showing the patterns one would predict if the targetscan or miRbase etc target predicitions are correct?

Many thanks in advance

Olivia
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