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Old 05-19-2013, 03:54 PM   #1
mshamblott
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Location: florida

Join Date: Feb 2013
Posts: 8
Default RNAseq collaborator search

We are looking for someone to collaborate on a research project that involves RNAseq data. The project is looking to understand a human cell population that is defined by expression of a cell surface marker. The experimental design has biological replication at 2 time points and compares an immuno-enriched cell population to a population that is depleted for this cell type. All the sequence data is done (20 million illumina reads/sample) and we are trying to find someone to work with. We are currently using the TopHat->cummeRbund workflow but will be interested in other comparing other platforms.

This is an unpaid academic collaboration. Coauthorship and future grant support are what we offer. If you have demonstrated experience with DE tools applied to mammalian RNAseq datasets and want to work for science then we might have something to talk about. Access to a powerful computer is a bonus. Currently we are on Galaxy.

Some of our questions:
What kind of cell type is our cell population most like?

Are there DE genes that will allow better definition/selection of this population?

Is there evidence for DE isoforms for some of the genes we know are important?


mike
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Old 09-20-2013, 04:05 AM   #2
ron128
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Location: Mumbai

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Hello, Is this still open??
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Old 10-01-2013, 11:15 AM   #3
rskr
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Location: Santa Fe, NM

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Have you considered making the data freely available, I could use a free data set to test with.
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