SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
how to convert data from PLINK to BEAGLE ShirleyLiu Bioinformatics 6 01-04-2014 01:09 AM
About BEAGLE Markers files illuminaGA Bioinformatics 0 11-26-2013 11:37 AM
BEAST + BEAGLE final tree??? AdrianP Bioinformatics 0 03-03-2013 05:50 AM
BEAGLE input file kanika_gen Bioinformatics 0 12-25-2012 11:37 PM
Help with converting files to BEAGLE format BW22 Bioinformatics 1 12-09-2012 06:45 PM

Reply
 
Thread Tools
Old 12-23-2013, 10:10 AM   #1
st1912
Junior Member
 
Location: NY

Join Date: Dec 2013
Posts: 1
Default Help: Beagle 4 phasing

Hello Everyone,

I am a newbie to BI and this is my first project so please bare with me. I was wondering if anyone has worked with Beagle 4 before and can help me with phasing data(mother-daughter duos)?

I have my data in plink format and after struggling with it for a week I have it in VCF format too. Beagle 4 does not have a good documentation and if you can give me any tips/advice it'll be great.

let me know if you need more information.

-Thanks
st1912 is offline   Reply With Quote
Old 12-23-2013, 10:16 AM   #2
vivek_
PhD Student
 
Location: Denmark

Join Date: Jul 2012
Posts: 164
Default

You might find this useful in case you haven;t found this already

http://gatkforums.broadinstitute.org...eagle-software

Here are some Beagle utility software to convert formats

http://faculty.washington.edu/browni...utilities.html
vivek_ is offline   Reply With Quote
Reply

Tags
beagle, bioinfomatics, gwas, phasing

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 04:11 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO