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Old 01-31-2014, 01:08 AM   #1
roll
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Default How to check quality of SNPs

After running my SNP calling, what are the things i can check to see that my results are good quality? And i didnt do any sislly mistakes?
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Old 01-31-2014, 03:44 AM   #2
JohnN
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Quote:
Originally Posted by roll View Post
After running my SNP calling, what are the things i can check to see that my results are good quality? And i didnt do any sislly mistakes?
I usually get some PCR sequenced.
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Old 02-03-2014, 03:53 AM   #3
TiborNagy
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You can also check the alignment in a genome browser. Additional informations (known phenotype, trio data, etc) also can help to find mistakes.
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quality control, quality filtering, snp, snp analysis, snp calling

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