SEQanswers

Go Back   SEQanswers > Applications Forums > Metagenomics



Similar Threads
Thread Thread Starter Forum Replies Last Post
shotgun sequencing dataset Heena Farooq 454 Pyrosequencing 7 08-14-2015 05:41 AM
Shotgun sequencing mido1951 Bioinformatics 3 07-24-2014 08:51 AM
Quantitative 16S profiling with multiple 16S genes per genome AaronS Metagenomics 1 10-26-2012 12:16 PM
best strategy for rRNA from shotgun? idoerg Bioinformatics 3 05-01-2011 09:19 AM
PubMed: Methods for generating shotgun and mixed shotgun/paired-end libraries for the Newsbot! Literature Watch 0 04-11-2009 05:40 AM

Reply
 
Thread Tools
Old 04-08-2016, 10:23 AM   #1
fanli
Senior Member
 
Location: California

Join Date: Jul 2014
Posts: 198
Default 16S vs shotgun

Have people done detailed comparisons of bacterial communities profiled using amplicon (e.g. 16S) versus shotgun sequencing? I know HMP has done this for certain samples, but I can't seem to find any papers describing their results.

Specifically, I'm looking to see what sort of M^2 values people have seen in Procrustes analysis. For example, Figure 4 of this paper doesn't report M2 values, only p-values which are known to be highly inflated and unreliable...
http://microbiomejournal.biomedcentr...168-015-0110-9
fanli is offline   Reply With Quote
Reply

Tags
16s, comparison, metagenomics, shotgun

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 09:03 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO