SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Recommended output or reads for 16s metagenomic miawmiaw0729 Metagenomics 0 05-28-2015 04:51 AM
Raw 16S Metagenomic data ineedhelp Bioinformatics 1 02-23-2015 04:34 AM
feature selection for metagenomic binning ROSSY THOE General 0 10-08-2014 01:27 AM
Emergent self-organizing maps from 4mer frequencies (binning metagenomic contigs) rhinoceros Bioinformatics 0 05-16-2014 03:35 AM

Reply
 
Thread Tools
Old 06-03-2016, 10:33 AM   #1
kopardev
Member
 
Location: VA, USA

Join Date: Oct 2011
Posts: 18
Default Metagenomic contig binning and 16S with MyCC

I have tried to use MyCC (http://www.nature.com/articles/srep24175) on samples with varied diversity and I always get very good accuracy between number of clusters and number of 16S sequences found in the metagenomic assembly. But, the problem is that all 16S sequences end up being part of 1 or 2 clusters. Why so? Can anyone explain this????
kopardev is offline   Reply With Quote
Reply

Tags
16s, binning, metagenomic assembly, metagenomics, mycc

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 05:25 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO