Go Back   SEQanswers > General

Similar Threads
Thread Thread Starter Forum Replies Last Post
Resources for miRNA Expression koneru_18 Bioinformatics 3 10-15-2013 05:05 AM
miRNA's expression normalization Giorgio C Bioinformatics 0 12-06-2011 10:54 AM
Mirna expression analysis moriah Bioinformatics 3 08-23-2011 01:46 AM
miRNA differential expression (DESeq) ericamica Bioinformatics 3 05-16-2011 07:18 AM

Thread Tools
Old 01-20-2011, 05:34 PM   #1
Location: BC, Canada

Join Date: Apr 2010
Posts: 21
Default miRNA targets expression profiles

Hi all,
I'm new to miRNA research and I'm curious about the tools already available. I have RNA-seq data from two samples, we've identified differentially expressed transcripts. I also have tag-seq data from the same two samples and we've identified differentially expressed miRNAs.
Are there any bioinformatic tool that are able to cross reference the two lists of differentially expressed genes and miRNAs to give as output miRNAs and targets genes showing the patterns one would predict if the targetscan or miRbase etc target predicitions are correct?

Many thanks in advance

Livi81 is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 11:24 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO