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Old 02-15-2011, 07:13 AM   #1
JohnK
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Default BCF Tools

Would anybody happen to know a link to where I can download BCF Tools?

J
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Old 02-15-2011, 07:47 AM   #2
epigen
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If you mean Heng Li's software, they are part of the latest samtools distribution, see
http://samtools.sourceforge.net/
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Old 02-15-2011, 08:45 AM   #3
JohnK
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Ah! thank you, epigen!!!
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Old 11-28-2013, 06:14 AM   #4
mmmm
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Quote:
Originally Posted by JohnK View Post
Would anybody happen to know a link to where I can download BCF Tools?

J
was wondering what is the command to use bcftools if it is installed as a part of samtools, please
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Old 11-28-2013, 06:27 AM   #5
mastal
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If it is installed on your computer, typing bcftools at the commandline prompt should give you something like this:

Code:
$ bcftools 

Program: bcftools (Tools for data in the VCF/BCF formats)
Version: 0.1.17-dev (r973:277)

Usage:   bcftools <command> <arguments>

Command: view      print, extract, convert and call SNPs from BCF
         index     index BCF
         cat       concatenate BCFs
         ld        compute all-pair r^2
         ldpair    compute r^2 between requested pairs
Otherwise, have a look in the samtools directory, there should be a subdirectory called bcftools.
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