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Old 06-20-2012, 07:20 AM   #1
Location: Maryland, USA

Join Date: May 2012
Posts: 60
Default How do you "database" your results?

How did you make a relational database for you genomic information/analysis results?
How long did it take you to design and implement?
Could someone comfortable with programming but without much experience do it, or does it require a pro?

After just a few months of NGS analysis, I am swimming in results: GFF files with all the information/annotations about the reference genomes, VCF files of indels and SNPs, snpEff-annotated VCF results, SMART annotated protein sequence results. But these are all flat files. I believe, at this point, a relational database is needed.
Genomics101 is offline   Reply With Quote
Old 06-20-2012, 07:23 AM   #2
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Location: Oxford

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That's a VERY GOOD question indeed. I don't have the answer yet as I'm trying to design one.
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Old 06-20-2012, 12:36 PM   #3
Location: California

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I am looking for an answer too..
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Old 06-23-2012, 04:22 AM   #4
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Location: Sweden

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I will need an answer to this question soon!
tayebwajb is offline   Reply With Quote

beginner, databases, newbie, programming

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