SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
DESeq data transformation and creating a heatmap heso Bioinformatics 0 12-10-2014 06:02 AM
extract dendrogram information from heatmap generated by heatmap.2 crazyhottommy Bioinformatics 6 11-24-2014 09:45 AM
Error creating my database in snpEff camilla_87 Bioinformatics 1 11-17-2014 09:39 AM
what's wrong with heatmap.2, heatmap turns to blue after finishing plotting crazyhottommy Bioinformatics 3 08-20-2013 11:02 AM
Error in CummeRbund while creating database Richard Barker RNA Sequencing 4 08-05-2013 04:59 PM

Reply
 
Thread Tools
Old 10-05-2016, 05:24 PM   #1
zillur
Senior Member
 
Location: Puerto Rico

Join Date: Sep 2014
Posts: 106
Default Getting error in creating heatmap from Orthogroups.csv

Hi there,
After running orthfinder, I got orthgroups.csv. I wanted to create a heat map using the attached script. But it gives me:

Code:
Error in matrix(0, nrow = nrow(m), ncol = max(m, na.rm = TRUE)) : 
  non-numeric matrix extent
Any suggestions?

I appreciate your comments.

Best Regards
Zillur
Attached Files
File Type: txt Orthogroups_heatmap.R.txt (705 Bytes, 1 views)
File Type: txt Orthogroups.csv.txt (9.9 KB, 0 views)
zillur is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 01:35 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO