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My repeatmasker(short for RM) seems weird
Hi, I have run RM with cross_match engine and 20 processors. But when I checked the processors I found something strange. When I type
$ ps aux | grep cross_match
I got something like this:
zmbin 3969 95.1 0.0 13480 5324 pts/8 R 10:53 0:06 /home/zmbin/zmbin/cross_match/cross_match -alignments -gap_init -30 -ins_gap_ext -6 -del_gap_ext -5 -minmatch 9 -minscore 225 -bandwidth 14 -masklevel 101 -matrix /usr/local/RepeatMasker/Matrices/crossmatch/20p45g.matrix ./RM_6225.MonDec21401102013/P_heterocycla_v1.0.Scaffolds.fas_batch-2093.masked /home/zmbin/zmbin//all_ltr_structure.txt
where zmbin is the user name, /home/zmbin/zmbin/cross_match/cross_match is the path where cross_match is located, and the most weird thing is the last part "/home/zmbin/zmbin//all_ltr_structure.txt" which is a path contained 2 slashes.
However, the processors are still running but with a quite low speed.
Can someone tell me what is wrong with my RM. Thanks in advance.
$ ps aux | grep cross_match
I got something like this:
zmbin 3969 95.1 0.0 13480 5324 pts/8 R 10:53 0:06 /home/zmbin/zmbin/cross_match/cross_match -alignments -gap_init -30 -ins_gap_ext -6 -del_gap_ext -5 -minmatch 9 -minscore 225 -bandwidth 14 -masklevel 101 -matrix /usr/local/RepeatMasker/Matrices/crossmatch/20p45g.matrix ./RM_6225.MonDec21401102013/P_heterocycla_v1.0.Scaffolds.fas_batch-2093.masked /home/zmbin/zmbin//all_ltr_structure.txt
where zmbin is the user name, /home/zmbin/zmbin/cross_match/cross_match is the path where cross_match is located, and the most weird thing is the last part "/home/zmbin/zmbin//all_ltr_structure.txt" which is a path contained 2 slashes.
However, the processors are still running but with a quite low speed.
Can someone tell me what is wrong with my RM. Thanks in advance.
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