We have just released a major update to our SeqMonk package for the analysis of large mapped sequence datasets on normal desktop PCs (or Macs). This release features a host of new functionality including:
You can get the new release from our project website at:
http://www.bioinformatics.bbsrc.ac.uk/projects/seqmonk/
[If you see the old release press shift+refresh to force our web cache to update]
We're keen to hear feedback about the program (good or bad!).
- Quantitation probes are now directional, meaning you can (for example) count the number of antisense reads for every transcript in the genome
- There is now support for either removing duplicate reads upon import or ignoring them in every quantitation method
- You can now extend reads when importing them to make the analysis of single end ChIP-Seq data easier
- You can import methylation call data directly from bisulphite seq files mapped with bismark
- There is a generic text import option for importing new annotation tracks
- The trend plot can now smooth your data interactively
- There is a mechanism to update genome annotation sets when new annotations become available
- Loading and saving of data is now 2X (often more) quicker
You can get the new release from our project website at:
http://www.bioinformatics.bbsrc.ac.uk/projects/seqmonk/
[If you see the old release press shift+refresh to force our web cache to update]
We're keen to hear feedback about the program (good or bad!).
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