Hello All,
I have a set of ~1000 sequences, they are of different length, minimum being 500nt. I want separate them into groups on the basis of similarity (phylogeny). I was using clustalw2 to do an multiple alignment and generate phylogenetic tree. But the problem is that manually dividing them into different groups by looking at phylogenetic tree will take a long time and can be error prone.
Is there some tool which I can use to automatically divide (cluster) the sequences into different groups?
I would really appreciate your help. Thanks
AK
I have a set of ~1000 sequences, they are of different length, minimum being 500nt. I want separate them into groups on the basis of similarity (phylogeny). I was using clustalw2 to do an multiple alignment and generate phylogenetic tree. But the problem is that manually dividing them into different groups by looking at phylogenetic tree will take a long time and can be error prone.
Is there some tool which I can use to automatically divide (cluster) the sequences into different groups?
I would really appreciate your help. Thanks
AK
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