Dear all,
I never met this problem before not until I used a multiple fasta file (around 30) with each fasta sequence around 2000 to 3000 bp, is it not applicable to use short reads to map to fasta sequence of such kind?
the problem is
[bwa_index] Pack FASTA... 0.00 sec
[bwa_index] Reverse the packed sequence... 0.00 sec
[bwa_index] Construct BWT for the packed sequence...
[BWTIncConstructFromPacked] 10 iterations done. 18660 characters processed.
[BWTIncConstructFromPacked] 20 iterations done. 28804 characters processed.
[BWTIncConstructFromPacked] 30 iterations done. 32948 characters processed.
BWTIncSetBuildSizeAndTextAddr(): Not enough space allocated to continue construction!
Would anyone help?
I never met this problem before not until I used a multiple fasta file (around 30) with each fasta sequence around 2000 to 3000 bp, is it not applicable to use short reads to map to fasta sequence of such kind?
the problem is
[bwa_index] Pack FASTA... 0.00 sec
[bwa_index] Reverse the packed sequence... 0.00 sec
[bwa_index] Construct BWT for the packed sequence...
[BWTIncConstructFromPacked] 10 iterations done. 18660 characters processed.
[BWTIncConstructFromPacked] 20 iterations done. 28804 characters processed.
[BWTIncConstructFromPacked] 30 iterations done. 32948 characters processed.
BWTIncSetBuildSizeAndTextAddr(): Not enough space allocated to continue construction!
Would anyone help?
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