Hi all. I am trying to install TopHat2 on a MAC. I have run ./configure and make, and have so far (I think), been successful. When I run make install I get the following error:
Can anyone help me?
Thanks!
Code:
Making install in src Makefile:1411: warning: overriding commands for target `libbam.a' Makefile:1041: warning: ignoring old commands for target `libbam.a' Makefile:1411: warning: overriding commands for target `libbam.a' Makefile:1041: warning: ignoring old commands for target `libbam.a' test -z "/usr/local/bin" || /usr/local/bin/tophat-2.0.13/install-sh -d "/usr/local/bin" /usr/local/bin/tophat-2.0.13/install -c 'samtools_0.1.18' '/usr/local/bin/samtools_0.1.18' /usr/local/bin/tophat-2.0.13/install: line 1: Installation: command not found /usr/local/bin/tophat-2.0.13/install: line 2: FastaTools.cpp: command not found /usr/local/bin/tophat-2.0.13/install: line 4: syntax error near unexpected token `C' /usr/local/bin/tophat-2.0.13/install: line 4: `Copyright (C) 1994, 1995, 1996, 1999, 2000, 2001, 2002, 2004, 2005 Free' make[2]: *** [install-binPROGRAMS] Error 1 make[1]: *** [install-am] Error 2 make: *** [install-recursive] Error 1
Thanks!
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