Hi,
In the GenomeBrowser 2.0, when I load my custom track (is this case is a BAM file) I can see the coverage and reads (when I zoom in); but I'm not able to diferenciate the reads that match the positive/negative strand (i.e. with different colors). I've tried to modify the config file without successful. This is what I got:
Any help?
Thanks
In the GenomeBrowser 2.0, when I load my custom track (is this case is a BAM file) I can see the coverage and reads (when I zoom in); but I'm not able to diferenciate the reads that match the positive/negative strand (i.e. with different colors). I've tried to modify the config file without successful. This is what I got:
Code:
[mapping_sorted.bam] feature = coverage:2000 min_score = 0 glyph = wiggle_xyplot height = 200 fgcolor = black bgcolor = black autoscale = local [mapping_sorted.bam] database = database_0 # do not change this! feature = read_pair glyph = segments draw_target = 1 show_mismatch = 1 mismatch_color = red bgcolor = blue fgcolor = blue height = 3 label = 1 label density = 50 bump = fast key = Shared track from http://mapping_sorted.bam
Thanks
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