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10-16-2013, 10:16 PM
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Junior Member
Location: india Join Date: Nov 2011
Posts: 5
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cuffmerge assembly vs denovo assembly of RNAseq data
Hi all,
I have RNAseq data of stress-control of various tissue of a plant. I am doing differential gene expression. In addition, cuffmerge provides me with transcripts assembled. But is this a valid transcriptome at publication ? Or should I go for a denovo assembly of the RNAseq data ? and for a comprehensive assembly of all the tissues together ? I have not come across publications reporting cuffmerge transcriptome. please advise. Thanks regards skm |
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| Tags |
| assembly, cuffmerge, rnaseq |
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