Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
DeNovo assembly using pacBio data krittika.sasmal Pacific Biosciences 50 06-05-2013 10:56 AM
Denovo assembly Thenna Bioinformatics 2 05-06-2013 07:09 AM
parameters for Denovo assembly nareshmvr Illumina/Solexa 10 03-01-2013 11:12 AM
MIRA Question: Improving 454 assembly with RNAseq data AaronS De novo discovery 0 01-13-2013 08:39 AM
denovo assembly nagaraj Bioinformatics 5 07-11-2012 07:13 AM

Thread Tools
Old 10-16-2013, 10:16 PM   #1
Junior Member
Location: india

Join Date: Nov 2011
Posts: 5
Default cuffmerge assembly vs denovo assembly of RNAseq data

Hi all,

I have RNAseq data of stress-control of various tissue of a plant. I am doing differential gene expression. In addition, cuffmerge provides me with transcripts assembled. But is this a valid transcriptome at publication ? Or should I go for a denovo assembly of the RNAseq data ? and for a comprehensive assembly of all the tissues together ?

I have not come across publications reporting cuffmerge transcriptome.

please advise.


skm is offline   Reply With Quote

assembly, cuffmerge, rnaseq

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 08:36 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO