Hello,I have problem while running artic minion command
eating
1. It could not recognize the pimer scheme which i have provided path of. so its creating new primer set folder.
2. while running it throrows error
samtools sort: failed to read header from "-"
the command is:
artic minion --minimap2 --medaka --medaka-model r941_min_fast_g303 --normalise 200 --threads 6 --scheme-directory /home/fmr/fieldbioinformatics-1.2.1/primer_scheme/ --read-file barcode3.fastq nCoV-2019/V3 barcode3
please let know the solution.
eating
1. It could not recognize the pimer scheme which i have provided path of. so its creating new primer set folder.
2. while running it throrows error
samtools sort: failed to read header from "-"
the command is:
artic minion --minimap2 --medaka --medaka-model r941_min_fast_g303 --normalise 200 --threads 6 --scheme-directory /home/fmr/fieldbioinformatics-1.2.1/primer_scheme/ --read-file barcode3.fastq nCoV-2019/V3 barcode3
please let know the solution.