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Old 02-28-2019, 05:54 AM   #1
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Location: West Lafayette, Indiana

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Default Transcription factor binding sites from ATAC peaks

I am working with ATACseq data and pursuant to calling peaks I am interested in identifying transcription factor binding sites using the called peaks.
Has anyone had success using TFBS tools, MotifBreakR, or Diffbind to identify transcription factor binding sites and any SNP located in these areas?
Are you using any different tools to investigate peaks?
I am new here so I appreciate your thoughts.
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