Hi,
Can anyone let me know if the formulae displayed below are accurate when trying to account for two different experimental variables (batch and age) with DEXSeq? Also, what does the "I(exon == exonID)" in the regression model do? Thank you!
--> formuladispersion used with the estimateDispersions() function
--> formula0 and formula1 used with the testForDEU() function
Can anyone let me know if the formulae displayed below are accurate when trying to account for two different experimental variables (batch and age) with DEXSeq? Also, what does the "I(exon == exonID)" in the regression model do? Thank you!
Code:
formuladispersion <- count ~ sample + (condition + batch + age) * exon
Code:
formula0 <- count ~ sample + batch * exon + age * exon + condition formula1 <- count ~ sample + batch * exon + age * exon + condition * I (exon == exonID)
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