Tweet
Good morning everyone!
I ran parallel_pick_otus_uclust_ref.py with a high quality fasta file and silva.nr.v119.align as the refence file.
On the QIIME website it says you should get two files - a .txt and a .log file. However, I got a directory file 'POTU_gdTg_'. And when you open this directory you get several files - deletion_list.txt; expected_out_files.txt; merge_map.tt; POTU_gdTg_.0.fasta; POTU_gdTg_.1.fasta; POTU_gdTg_.2.fasta; POTU_gdTg_.3.fasta; POTU_gdTg_.4.fasta; POTU_gdTg_.5.fasta; POTU_gdTg_jobs.txt.
Does anyone what these files mean? And which would I use to make the OTU tables? Is there another set before I can create the OTU tables? Do I need to assign taxonomy first?
Thaaaaaanks!!!!
I ran parallel_pick_otus_uclust_ref.py with a high quality fasta file and silva.nr.v119.align as the refence file.
On the QIIME website it says you should get two files - a .txt and a .log file. However, I got a directory file 'POTU_gdTg_'. And when you open this directory you get several files - deletion_list.txt; expected_out_files.txt; merge_map.tt; POTU_gdTg_.0.fasta; POTU_gdTg_.1.fasta; POTU_gdTg_.2.fasta; POTU_gdTg_.3.fasta; POTU_gdTg_.4.fasta; POTU_gdTg_.5.fasta; POTU_gdTg_jobs.txt.
Does anyone what these files mean? And which would I use to make the OTU tables? Is there another set before I can create the OTU tables? Do I need to assign taxonomy first?
Thaaaaaanks!!!!
Comment