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04-09-2014, 04:18 AM
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#1 |
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Member
Location: Europe Join Date: Mar 2014
Posts: 42
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ORF Finder-Metagenome
I've finished my first metagenome assembly and would like to know if there is a good ORF finder I could try out before proceeding to functional annotation with CAMERA for example.
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04-09-2014, 04:35 AM
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#2 |
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Senior Member
Location: Denmark Join Date: Apr 2009
Posts: 153
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04-09-2014, 05:02 AM
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#3 |
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Member
Location: Europe Join Date: Mar 2014
Posts: 42
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Thank you, I also found out CAMERA has an ORF finder as well.
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05-07-2014, 07:32 AM
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#4 |
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Member
Location: DE Join Date: Dec 2012
Posts: 65
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vanillasky...are you mining assemblies for specific genes/enzymes?
i'm trying to figure out a more automated way of picking out ORFs that relate to specific enzyme families. |
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05-08-2014, 01:34 AM
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#5 |
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Member
Location: Europe Join Date: Mar 2014
Posts: 42
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Hi Lac302! Maybe you can clarify what you mean by mining assemblies? I am interested in annotating the contigs coming out of my assembled metagenomes. Ultimately, yes I would like to focus on those contigs containing genes related to a certain function.
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