Announcing: BioDSL - Bioinformatics Domain Specific Language

maasha · 11-19-2015, 01:08 AM

BioDSL (pronounced Biodiesel) is a Domain Specific Language for creating bioinformatic analysis workflows. A workflow may consist of several pipelines and each pipeline consists of a series of steps such as reading in data from a file, processing the data in some way, and writing data to a new file.

BioDSL is build on the same principles as Biopieces, where data records are passed through multiple commands each with a specific task. The idea is that a command will process the data record if this contains the relevant attributes that the command can process. E.g. if a data record contains a sequence, then the command reverse_seq will reverse that sequence.

MarkDFreeman · 10-30-2019, 03:24 AM

Thanks Guys, Please do share something about writing skills.

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11-19-2015, 01:08 AM	#1
maasha Senior Member Location: Denmark Join Date: Apr 2009 Posts: 153	Announcing: BioDSL - Bioinformatics Domain Specific Language BioDSL (pronounced Biodiesel) is a Domain Specific Language for creating bioinformatic analysis workflows. A workflow may consist of several pipelines and each pipeline consists of a series of steps such as reading in data from a file, processing the data in some way, and writing data to a new file. BioDSL is build on the same principles as Biopieces, where data records are passed through multiple commands each with a specific task. The idea is that a command will process the data record if this contains the relevant attributes that the command can process. E.g. if a data record contains a sequence, then the command reverse_seq will reverse that sequence.

10-30-2019, 03:24 AM	#2
MarkDFreeman Banned Location: 1350 Evergreen Lane Bell, CA 90201 Join Date: Jun 2019 Posts: 1	Thanks Guys, Please do share something about writing skills.