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Old 02-06-2012, 02:50 PM   #1
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Location: France

Join Date: Dec 2011
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Question Help with Exonerate output

I'm doing some cdna to genomic dna alignments with exonerate but am having trouble parsing the output- not very good at that sort of thing.
I would like the gff and alignment as separate files. In particular does anyone know how to input the ryo option to make the alignment more like a basic fasta formatted alignment? I'd like to combine the results and make a multiple sequence alignment I can edit and view to make a consensus sequence.
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exonerate, parsing

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