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Old 04-26-2012, 11:48 PM   #1
dkrtndhkd
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Post annovar output - question

I run annovar to annotate my snp file.

I saw this message:

WARNING: A total of 273 sequences will be ignored due to lack of correct ORF annotation

somebody please let me know what's the meaning?
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Old 04-27-2012, 06:51 AM   #2
Heisman
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I'm pretty sure that's in reference to sequences it loads from its own databases; nothing to do with your samples. I wouldn't worry about it.
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Old 04-29-2012, 10:03 AM   #3
dkrtndhkd
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Thank you

and futher question...

the word 'ignored' means that Annovar didn't annotate any gene name and just deleted the SNP??
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Old 04-29-2012, 10:23 AM   #4
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I can't remember off the top of my head. Could you copy and paste the text where it says "ignored" (and if it's associated with a specific input line, copy and paste that as well).
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