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04-26-2012, 11:48 PM
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#1 |
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Member
Location: Seoul Join Date: Jan 2012
Posts: 42
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annovar output - question
I run annovar to annotate my snp file.
I saw this message: WARNING: A total of 273 sequences will be ignored due to lack of correct ORF annotation somebody please let me know what's the meaning? |
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04-27-2012, 06:51 AM
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#2 |
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Senior Member
Location: St. Louis Join Date: Dec 2010
Posts: 535
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I'm pretty sure that's in reference to sequences it loads from its own databases; nothing to do with your samples. I wouldn't worry about it.
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04-29-2012, 10:03 AM
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#3 |
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Member
Location: Seoul Join Date: Jan 2012
Posts: 42
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Thank you
 and futher question... the word 'ignored' means that Annovar didn't annotate any gene name and just deleted the SNP?? |
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04-29-2012, 10:23 AM
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#4 |
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Senior Member
Location: St. Louis Join Date: Dec 2010
Posts: 535
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I can't remember off the top of my head. Could you copy and paste the text where it says "ignored" (and if it's associated with a specific input line, copy and paste that as well).
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