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Old 05-09-2012, 05:54 AM   #1
Location: Beijing

Join Date: Feb 2011
Posts: 16
Default strand specific RNA-seq mapping

Does anyone know how do mapping for strand specific RNA-seq data? which tools can work well? what the parameter of tools for strand specific infomation of RNA-seq data?
Looking forward to your answer.
Thank you very much! Best wishes!
qqtwee is offline   Reply With Quote
Old 07-10-2012, 10:23 PM   #2
Location: Beijing

Join Date: Mar 2010
Posts: 18

Tophat is much preferable I guess. Because it can align RNA-Seq reads with juntion, as well as the --library-type parameter to tackle with strand-specific library.
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