|
|
|
|
|||||||
Similar Threads
|
||||
| Thread | Thread Starter | Forum | Replies | Last Post |
| Please help me understand what went wrong | rhinoceros | Illumina/Solexa | 12 | 08-16-2013 11:33 AM |
| To understand Punnett Squares | ardmore | General | 2 | 08-31-2011 02:03 PM |
| How to understand the output of mpileup like this | skblazer | Bioinformatics | 0 | 12-05-2010 11:43 AM |
| Help me understand MAQ indexing | pieffe | Bioinformatics | 0 | 06-01-2009 08:09 AM |
 |
|
|
Thread Tools |
03-22-2014, 07:11 AM
|
#1 |
|
Junior Member
Location: Boston Join Date: Oct 2013
Posts: 3
|
trying to understand pfams
I want to download seqs of a pfam, build an hmm, and search a genome for the hmm.
The wellcome sanger site is a bit confusing to me. I can see there are 250 or so sequences total in the pfam, but it also says there are 4 different architectures. What does this mean? 4 "types" in this pfam? Does this mean I want to hmm search 4 times? Which sequences map to which architectures? Any help appreciated. |
|
|
|
03-25-2014, 12:28 AM
|
#2 |
|
Member
Location: India Join Date: Aug 2010
Posts: 78
|
The hmmer tool, is your best bet for searching a nucleotide sequence with a hmm model.
For a detailed appreciation of hmm model use and lot of examples please refer to the hmmer 3 documentation hope this helps, -- pg |
|
|
|
|
| Thread Tools | |
|
|
