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08-26-2012, 09:05 PM
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Junior Member
Location: China Join Date: Oct 2011
Posts: 3
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summarize_annovar.pl error message
Any one knew how to deal with this problem ?
Thanks! $ perl summarize_annovar.pl -buildver hg19 653_snps.avinput -outfile 653_snps ./humandb NOTICE: the --ver1000g argument is set as '1000g2010nov' by default NOTICE: Running step 1 with system command <annotate_variation.pl -geneanno -buildver hg19 -dbtype refgene -outfile 653_snps -exonsort 653_snps.avinput ./humandb> Error running system command: <annotate_variation.pl -geneanno -buildver hg19 -dbtype refgene -outfile 653_snps -exonsort 653_snps.avinput ./humandb> |
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| annovar annotation, summazize_annovar.pl |
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