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01-31-2013, 12:57 AM
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Junior Member
Location: New Zealand Join Date: Dec 2011
Posts: 9
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Trouble with RG line
Hi,
am trying to add RG line to a Sam made after bwa alignment prior to GATK. This is the command: bwa sampe -f OD.sam -r "@RG\tID:<ODexome>\tLB:<ODexome>\tSM:<ODexome>\tPL:ILLUMINA" hg19 OD_R1.sai OD_R2.sai SampleR1_001.fastq SampleR2_001.fastq BUT get this error! [bwa_sai2sam_pe] malformated @RG line Any ideas? Cheers, FGP Last edited by FGponce; 01-31-2013 at 10:41 PM. |
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