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10-10-2014, 12:12 PM
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#1 |
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Junior Member
Location: Canada Join Date: Aug 2014
Posts: 9
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EdgeR - trim DGEList by data feature
Greetings!
I am using EdgeR to perform analysis on a large dataset. For some of my questions, I am interested in looking only at a subset of my data, based on a specific field in the dataset. Is it possible to filter out the unwanted samples based on the data in a specific group? For example In the below example, I would like to include only samples from location L1 My DGEList $counts N1 N2 N3... 0 4 6 8 1 5 2 1 2 3 7 9 3 0 0 1 ... $samples group lib.size ... N1 L1 13661 N2 L2 14228 N3 L1 20557 ... Any assistance is appreciated! |
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