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Old 06-16-2010, 09:09 AM   #1
drillbit
Junior Member
 
Location: nyc

Join Date: Jun 2010
Posts: 2
Default beginner comparing exomes

Hi, starting on my very first NGS project...
I have 2 sequenced exomes in FASTQ format and I want to do a couple basic things:

1. Compute some usual summary statistics for each of the exomes - # of cSNPS, % in dbSNP, #Heterozygous and #homozygous

2. Get a list of SNPs that are common between the 2 exomes.

I have been looking into various software options, etc but thought here would be a good place to get some guidance.

Thanks in advance.
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exome analysis, exome statistics, sequence comparison

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