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07-26-2010, 11:49 AM
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#1 |
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Junior Member
Location: md Join Date: Sep 2009
Posts: 9
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bowtie indexes for Soap2?
Hi,
I am wondering should I build BWT-indexed human genome from scratch for Soap2, or I can use bowtie-indexed one from ftp://ftp.cbcb.umd.edu/pub/data/bowtie_indexes/ ? Thank you. |
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07-26-2010, 03:53 PM
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#2 |
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Member
Location: Stanford, CA Join Date: May 2010
Posts: 88
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I would be surprised if you can, since they are different packages.
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SpliceMap: De novo detection of splice junctions from RNA-seq Download SpliceMap Comment here 
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07-29-2010, 07:32 AM
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#3 |
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Senior Member
Location: Germany Join Date: Oct 2008
Posts: 415
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Build them, it's not too tricky at all.
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