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Old 07-26-2010, 11:49 AM   #1
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Location: md

Join Date: Sep 2009
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Default bowtie indexes for Soap2?

I am wondering should I build BWT-indexed human genome from scratch for Soap2, or I can use bowtie-indexed one from


Thank you.
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Old 07-26-2010, 03:53 PM   #2
Location: Stanford, CA

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I would be surprised if you can, since they are different packages.
SpliceMap: De novo detection of splice junctions from RNA-seq
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Old 07-29-2010, 07:32 AM   #3
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Build them, it's not too tricky at all.
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