raw data of paper "The evolution of gene expression levels in mammalian organs"

[rzhang]

I am just wondering if anyone know where the raw data of the paper titled "The evolution of gene expression levels in mammalian organs" in Nature is.

I try to get the raw sequence data via the GSE number (GSE30352) supplied in the paper; however I found that for most samples, it is shows that the data is not loaded yet (for example: http://www.ncbi.nlm.nih.gov/sra?term=SRX081869).

Thanks

[adaptivegenome]

I am just wondering if anyone know where the raw data of the paper titled "The evolution of gene expression levels in mammalian organs" in Nature is.

I try to get the raw sequence data via the GSE number (GSE30352) supplied in the paper; however I found that for most samples, it is shows that the data is not loaded yet (for example: http://www.ncbi.nlm.nih.gov/sra?term=SRX081869).

Thanks

Did you ask the authors?

[rzhang]

Did you ask the authors?

I asked the authors but I have not received the feedback yet.

[srasdk]

Try SRA now:

http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?study=SRP007412

[tir_al]

You can also dowload it fro ENA:

http://www.ebi.ac.uk/ena/data/view/SRP007412

They have a nice .tsv description file of the whole experiment, which can be used to automate the download.

[rzhang]

Thanks your guys for the information! Now I can access the raw data, however I found that the base quality of the reads are very low (usually between 20). Is there anything wrong?