SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Programs for GC content and CpG Islands HelenM Bioinformatics 8 09-21-2014 06:21 PM
ChIP-Seq: ChIP-chip versus ChIP-seq: Lessons for experimental design and data analysi Newsbot! Literature Watch 0 03-02-2011 02:50 AM
W-ChIPeaks: A web application for processing ChIP-chip and ChIP-seq data buckeye3947 Bioinformatics 0 01-24-2011 01:05 PM
CpG Islands vs CHIP-Seq data bogu0001 Epigenetics 4 02-05-2009 09:33 PM
PubMed: An integrated software system for analyzing ChIP-chip and ChIP-seq data. Newsbot! Literature Watch 0 11-04-2008 05:03 AM

Reply
 
Thread Tools
Old 02-04-2009, 06:36 PM   #1
bogu0001
Junior Member
 
Location: singapore

Join Date: Feb 2009
Posts: 3
Default CpG Islands Vs CHIP-Seq data

Hey guys
I have CHIP-Seq data of Non Coding RNA with Accession nos, probe ids and other usual features of BED file.
I want to match the nearest CpG Islands related to the CHIP-Seq data.
The problems of mine are


1.which dataset has all the CpG islands related to my data (Human mRNAs)???
I downloaded a dataset named cpgdump12_1k (Full annotation dataset) from CpG Island database.But it doesn't have complete relevant data that match CHIP data

2.How to match the nearest CpGs to CHIP data???

PERL???????????
UNIX????????????


help would be appreciated.
bogu0001 is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 10:47 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO