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Old 08-15-2011, 02:24 AM   #1
Irina Pulyakhina
Location: Oxford

Join Date: Sep 2010
Posts: 24
Default TopHat 1.3.1 coverage islands

Dear all,

While TopHat searches for introns, it scans the so-called "coverage islands". Does anyone know what is the coverage cutoff for a region to become such island and also can this cutoff be changed manually?

Thanks in advance,
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