Dear all,
I am trying to assemble a bacterial genome. I have trimmed each read and also removed low quality reads. I also removed reads having "N". The genome coverage is above 150. I used velvet and SOAPdenovo with different parameters and k-mers but always getting N50 less than 2000. Any suggestion ?? Thanks in advance
I am trying to assemble a bacterial genome. I have trimmed each read and also removed low quality reads. I also removed reads having "N". The genome coverage is above 150. I used velvet and SOAPdenovo with different parameters and k-mers but always getting N50 less than 2000. Any suggestion ?? Thanks in advance
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