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Old 09-14-2014, 12:23 AM   #1
pranjan77
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Location: knoxville, TN

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Default Combining DNASeq and RNASeq data

I have multiple RNASeq datasets from one plant species which does not have an assembled reference genome. But I have access to three whole genome re-sequencing(DNASeq) datasets from individuals in the same species and they are aligned to the reference genome in a close species. Any suggestions on how to get the best count for RNASeq in this scenario would be very helpful.

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Old 09-14-2014, 07:24 AM   #2
bio_informatics
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This has been cross posted at:


https://www.biostars.org/p/112537/

Please mention if you have posted at other website and refrain doing it.
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de novo assembly, dnaseq, rnaseq, transcript abundance

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