SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
PubMed: Chromothripsis and human disease: piecing together the shattering process. Newsbot! Literature Watch 0 03-17-2012 05:20 AM
Identifying human disease SNPs BetterPrimate Bioinformatics 1 11-05-2010 06:40 AM
454 related gene expression studies apratap Bioinformatics 0 02-02-2010 09:02 AM

Reply
 
Thread Tools
Old 05-28-2013, 08:08 AM   #1
xfh
Member
 
Location: China

Join Date: Jan 2011
Posts: 26
Default how to get a gene set (human) related with a disease (such as AD, CHD ...)

Dear everyone,

here I want to get all the (human )genes related with a specific disease (such as AD ...), any databases could do it? hope some suggestions, thanks all.

xiao
xfh is offline   Reply With Quote
Old 05-28-2013, 08:34 AM   #2
GenoMax
Senior Member
 
Location: East Coast USA

Join Date: Feb 2008
Posts: 6,998
Default

Searching OMIM would be a free option: http://omim.org/entry/104300?search=ad&highlight=ad

There are commercial options (e.g. Ingeniuty) that have disease specific "pathways".
GenoMax is offline   Reply With Quote
Old 05-29-2013, 08:10 AM   #3
xfh
Member
 
Location: China

Join Date: Jan 2011
Posts: 26
Default

thanks for your reply.
however, when I search a "Azheimer disease" like term, it will get many different omim number. as the web show, http://omim.org/search?index=entry&s...efix_sort+desc . if I need to check all the numbers, and any simple methods to exort the related genes?
xfh is offline   Reply With Quote
Old 05-29-2013, 08:17 AM   #4
Richard Finney
Senior Member
 
Location: bethesda

Join Date: Feb 2009
Posts: 700
Default

KEGG :
http://www.genome.jp/kegg/pathway.html#disease

BIOCARTA:
http://www.biocarta.com/genes/allPathways.asp

DAVID:
http://david.abcc.ncifcrf.gov/

You may need to do some scraping.
Richard Finney is offline   Reply With Quote
Old 05-29-2013, 05:58 PM   #5
xfh
Member
 
Location: China

Join Date: Jan 2011
Posts: 26
Default

thank you very much.

Quote:
Originally Posted by Richard Finney View Post
xfh is offline   Reply With Quote
Old 04-03-2014, 01:55 AM   #6
erezts
Junior Member
 
Location: The Negev, Israel

Join Date: May 2013
Posts: 6
Default

According to AlzGene database, there are 695 Ad related genes (from association studies).
where do I find the full gene list?
erezts is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 10:24 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO