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Old 08-10-2011, 06:55 AM   #1
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Default sample Illumina RNAseq datasets

I am attempting to start a workflow setup for RNAseq analyses. I would like to get a hold of a reasonably sized Illumina RNAseq dataset to do some data transfer tests and tests some of the alignment tools out there. Was thinking to use Pickrell, 2010. How big is 'reasonable'? are the raw files FASTQ? and does anyone have a suggestion on an available human dataset to play around with?
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Old 04-10-2012, 06:29 PM   #2
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This can be a good starting point for you:

Do start with around 30 - 50 million reads to do useful analysis
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Old 04-11-2012, 05:10 AM   #3
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Filter on the instrument type using the left column.
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Old 04-11-2012, 07:07 AM   #4
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i have found the illumina bodymap2 data to be a good test set. This includes multiple formats (SE/PE) from 16 human tissues.
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fastq, illumina, rnaseq, sample datasets

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