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Old 03-13-2012, 11:22 AM   #1
pepperoni
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Default Script for converting fastq back to color csfasta and qual

Hello, does anyone know a script to convert a fastq file back to color csfasta and qual? The fastq file is in color (numbers, not double decoded) so I guess it must be simple, but I am not a programmer, so I was wondering if there is already something out there.
thanks
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Old 03-14-2012, 07:59 AM   #2
brentp
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Default

I wrote a script to do this here:
https://github.com/brentp/bowfast/bl...from-bfastq.py

use the raw file from here:
https://raw.github.com/brentp/bowfas...from-bfastq.py

as:

python csfasta-from-bfastq.py some.bfastq

and it will write some_F3_QV.qual and some_F3.csfasta
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Old 03-14-2012, 09:02 AM   #3
pepperoni
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Thank you very much brentp

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