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Old 04-11-2016, 11:10 AM   #1
David Lyon
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Default bam-readcount

I am trying to find ASE using as input bam files via RNAse alignments.

I tried using a number of tools and ended up with https://github.com/genome/bam-readcount

Is this a standard tool to use to measure ASE or should I be using something else.

Can someone describe a workflow to look at ASE using bam-readcount

Thanks in advance
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Old 04-11-2016, 11:45 AM   #2
azneto
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http://journals.plos.org/plosone/art...l.pone.0126911
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