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Old 05-11-2018, 07:07 AM   #1
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Location: france

Join Date: May 2018
Posts: 1
Question condetri illumina sequences trimming

I'm new in bioinformatics and I'm trying to launch the program condetri for the quality trimming of my paired end illumuna sequences. in the manual they say to use this command line:
perl -fastq1=file1 [-fastq2=file2 -prefix=s
-cutfirst=i -cutlast=i -rmN -notrim -hq=i -lq=i -frac=[0,1]
-lfrac=[0,1] -minlen=i -mh=i -ml=i -sc=i -pb=s]

so I have prepared the line like that:
perl -fastq1=try1fw.fastq.gz [-fastq2=try1rv.fastq.gz -prefix=s
-cutfirst=0 -cutlast=0 -rmN=no -notrim=no -hq=25 -lq=10 -frac=[0.8]
-lfrac=[0] -minlen=50 -mh=5 -ml=1 -sc=64 -pb=no

...but doesn't work.

it produce an answere like that:
Can't locate object method "TIEHANDLE" via package "IO::Zlib" at line 323.

what does it means and how can I solve it?

thanks guys and sorry for my ignorance.
pedroassoluto is offline   Reply With Quote

condetri, illumina, line, sequences, trimming

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