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Old 06-27-2017, 02:14 AM   #1
SeqTroubles
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Location: Ireland

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Default Tanglegram advice

Hello all,

Im looking to construct a tanglegram of core vs accessory genes. But I want to colour the associations by some metadata.

I have been using R package ape with cophyloplot but Ive not had any great success the colour of the lines in not accurate. I was wonder what do you use when you construct tanglegrams?

Thanks
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Old 06-29-2017, 04:32 AM   #2
bsp017
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Default

I used Dendroscope several years ago to compare fingerprints v gyrase B sequences. Not very customisable but maybe worth a try
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