Hi,
I am using MEME without any problem for input dataset of about 6 million bases. Whereas I am facing problem in datatset of about 17 million. The program halts mid-way without giving any error message.
In both cases the -maxsize is set to 150000000 and -motifs=1.
If it is the problem with data size should i use an alternative to MEME or is it ok if I split the input fasta file into 3 or 4 fasta files and run them individually.
It would be really great if anybody could help me with this
I am using MEME without any problem for input dataset of about 6 million bases. Whereas I am facing problem in datatset of about 17 million. The program halts mid-way without giving any error message.
In both cases the -maxsize is set to 150000000 and -motifs=1.
If it is the problem with data size should i use an alternative to MEME or is it ok if I split the input fasta file into 3 or 4 fasta files and run them individually.
It would be really great if anybody could help me with this
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