I wanted to get the consensus sequence from a bam file and came across this
http://sourceforge.net/apps/mediawik...?title=SAM_FAQ
When I typed it, it cant run anymore because pileup has apparently been removed. It recommends using mpileup but theres no -c switch for consensus. Any way to do this using mpileup or should I just get an older version of samtools?
http://sourceforge.net/apps/mediawik...?title=SAM_FAQ
When I typed it, it cant run anymore because pileup has apparently been removed. It recommends using mpileup but theres no -c switch for consensus. Any way to do this using mpileup or should I just get an older version of samtools?
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